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* Commandline configuration will be stored in an overlay
* This overlay won't be shown on the configuration page
* This overlay won't be saved
* Also slightly reworked CLI Argument creation
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Also fixes header comparison error
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+ fixed pdf-as placeholder
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+ removed some other debug messages
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+ loading log4j properties from the local file
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Only save once
Allow saving to input doc directory
Ask whether to overwrite existing file
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